| 2.01 Three Kings Islands |
| 2.02 North Cape (Scott Point to Ohao Point) |
| 3.01 Great Exhibition Bay and Rangaunu Bay (Ohao Pt to Karikari Bay/Cape Karikari) |
| 3.02 Parengarenga Harbour |
| 3.03 Houhora Harbour |
| 3.04 Rangaunu Harbour |
| 3.05 Doubtless Bay (Knuckle Point, Karikari Peninsula to Berghan Point) |
| 3.06 Whangaroa Harbour |
| 3.07 Cavalli (Karikari Bay/Cape Karikari to Cape Wiwiki) |
| 3.08 Bay of Islands |
| 3.09 Cape Brett to Ocean Beach/Bream Head |
| 3.10 Poor Knights Islands |
| 3.11 Whangarei Harbour |
| 3.12 Bream Bay (Ocean Beach/Bream Head to Pakiri/Okakari Point, including Hen and Chickens Islands and Sail Rock) |
| 3.13 Little Barrier Island (Hauturu) |
| 3.14 Mokohinau Islands |
| 3.15 Western Great Barrier Island (west coast from Miners Head south to Cape Barrier and adjacent islands) |
| 3.16 Eastern Great Barrier Island (north and east coasts from Miners Head to Cape Barrier including Rakitu Island) |
| 3.17 Mid Hauraki Gulf (Pakiri/Okakari Point to eastern Waiheke Island) |
| 3.18 Inner Hauraki Gulf (South Takatu Peninsula to Matingarahi) |
| 3.19 Waitemata Harbour |
| 3.20 Inner Firth of Thames (Kaiaua to Tararu) |
| 3.21Outer and mid Firth of Thames (Matingarahi to Deadmans Point) |
| 3.22 Coromandel (Deadmans Point to Kaiiti Point) |
| 3.23 Colville (Kaiiti Point to Te Anaputa Point) |
| 3.24 East Coromandel Island Groups (Includes Cuvier, Mercury, Alderman Islands) |
| 3.25 East Coromandel Coast (Te Anaputa Point to Waihi Beach) |
| 3.26 Bay of Plenty (Waihi Beach to Opape, includes nearshore islands) |
| 3.27 Tauranga Harbour (Bowentown Heads to Mount Maunganui) |
| 3.28 Ohiwa Harbour |
| 3.29 Tuhua/Mayor Island |
| 3.30 White Island (Whakaari) and Volkner Rocks (Te Paepae Aotea) |
| 3.31 Motu (Opape to Tokata Point) |
| 3.32 Te Kaha (Tokata Point to Whangaparaoa River mouth) |
| 3.33 Matakaoa (Whangaparaoa River mouth to Hicks Bay) |
| 4.01 Ninety Mile Beach (Scott Point to Tauroa Point) |
| 4.02 Hokianga Coast (Tauroa Point to Maunganui Bluff) |
| 4.03 Hokianga, Whangape and Herekino Harbours |
| 4.04 West Auckland (Maunganui Bluff to Waikato River mouth) |
| 4.05 Kaipara Harbour |
| 4.06 Karekare (Muriwai Beach to Karekare) |
| 4.07 Manukau Harbour |
| 4.08 Waikato River mouth and delta |
| 4.09 Waikato River mouth to Raglan Harbour entrance |
| 4.10 Raglan, Aotea and Kawhia harbours |
| 4.11 Karioi (South of Raglan Harbour entrance to Albatross Point, including Papanui Point) |
| 4.12 Gannet Island |
| 4.13 Albatross Point to Tirua Point |
| 4.14 Mokau (Tirua Point to Mokau) |
| 4.15 North Taranaki (Mokau River to Motunui) |
| 4.16 Cape Egmont (Motunui to Hawera) |
| 4.17 Patea (Hawera to Wanganui) |
| 4.18 Manawatu (Wanganui to Paekakariki) |
| 4.19 Kapiti Island |
| 4.20 Paekakariki to Sinclair Head (including Mana Island, excluding Porirua Harbour) |
| 4.21Porirua Harbour (Plimmerton, and Pauatahanui and Porirua inlets) |
| 4.22 South-east outer Marlborough Sounds (Cape Jackson to Rarangi) |
| 4.23 Port Underwood |
| 4.24 Tory Channel |
| 4.25 Queen Charlotte Sound |
| 4.26 Pelorus Sound |
| 4.27 Outer Marlborough Sounds (Two Bay Point, D?Urville Island to Cape Jackson) |
| 4.28 East Tasman Bay (Nelson to Two Bay Point, D?Urville Island) |
| 4.29 Tasman Bay (north of Riwaka River mouth to Nelson) |
| 4.30 Abel Tasman (Tata Islands to north of Riwaka River mouth) |
| 4.31 Golden Bay (Farewell Spit south to Tata Islands) |
| 4.32 Farewell Spit (Pillar Point to end of Farewell Spit) |
| 4.33 Whanganui Inlet |
| 4.34 Buller (Pillar Point to Point Elizabeth) |
| 4.35 North Westland (Point Elizabeth to Heretaniwha Point) |
| 4.36 North Canterbury Bight (Timaru to Birdlings Flat) |
| 4.37 Lakes Ellesmere and Forsyth |
| 4.38 Banks Peninsula Coast (Birdlings Flat to Godley Head) |
| 4.39 Banks Peninsula Harbours |
| 4.40 Pegasus Bay (Godley Head to Waipara River mouth) |
| 4.41 North Canterbury (Waipara River mouth to Haumuri Bluff) |
| 4.42 South Kaikoura coast (Haumuri Bluff to Waipapa Bay) |
| 4.43 North Waipapa Bay to Cape Campbell. |
| 4.44 Clifford Bay and Cloudy Bay |
| 4.45 Wellington South Coast (Sinclair Head to Point Dorset) |
| 4.46 Wellington Harbour (Point Dorset to Eastbourne) |
| 4.47 Eastbourne to Turakirae Head (east of Orongorongo River) |
| 4.48 Turakirae Head to Thrust Creek |
| 4.49 Palliser Bay (Thrust Creek to Ngawihi) |
| 4.50 Wairarapa (Ngawihi to Cape Turnagain) |
| 6.01 Fiords |
| 6.02 Puysegur (north of Five Fingers Peninsula to east of Laka Hakapoua outlet) |
| 6.03 South-west coast (east of Lake Hakapoua outlet to west of Te Waewae Bay) |
| 6.04 Solander Islands |
| 6.05 West Te Waewae Bay to Tiwai Point (Bluff) |
| 6.06 South Coast (Tiwai Point (Bluff) to Waipapa Point) |
| 6.07 Awarua wetland complex |
| 6.08 Ruapuke Island group |
| 6.09 Foveaux Strait |
| 6.10 Northeast Stewart Island (Black Rock Point to Breaksea Islands) |
| 6.11 Paterson Inlet |
| 6.12 South Stewart Island (Breaksea Islands to Doughboy Bay) |
| 6.13 Port Pegasus |
| 6.14 Western Stewart Island (Doughboy Bay to Black Rock Point)ÿ |
| 6.15 Catlins (Waipapa Point to Nugget Point) |
| 6.16 Clutha (Nugget Point to Waldronville) |
| 6.17 Otago Peninsula (Waldronville to Taiaroa Head) |
| 6.18 Otago Harbour |
| T1.01 Transition Zone: North Island East Coast. Te Araroa (Hicks Bay to Whakariki Point) |
| T1.02 Transition Zone: North Island East Coast. Gisborne (Whakariki Point to Mahanga) |
| T1.03 Transition Zone: North Island East Coast. Mahia Peninsula (Mahanga to Waikokopu, includes Portland Island) |
| T1.04 Transition Zone: North Island East Coast. Hawke Bay (Waikokopu to Cape Kidnappers) |
| T1.05 Transition Zone: North Island East Coast. Southern Hawke Bay (Cape Kidnappers to Cape Turnagain) |
| T2.01 Transition Zone: South Island West Coast. South Westland (Heretaniwha Point to Yates Point) |
| T2.02 Transition Zone: South Island Wast Coast. Outer Fiordland Coast (Yates Point to north of Five Fingers Penins |
| T3.01 Transition Zone: South Island East Coast. South Canterbury Bight (Timaru to Oamaru) |
| T3.02 Transition Zone: South Island East Coast. North Otago (Oamaru to Taiaroa Head) |